STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2803PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: rpb:RPB_1480 heat-like repeat protein. (320 aa)    
Predicted Functional Partners:
Xaut_2801
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbt:BBta_4884 putative fumarate reductase/succinate dehydrogenase, flavoprotein subunit.
    0.970
Xaut_2802
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: nwi:Nwi_0677 4Fe-4S ferredoxin, iron-sulfur binding.
 
    0.960
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.931
Xaut_2084
KEGG: rpb:RPB_1474 ABC transporter substrate-binding protein.
 
    0.787
Xaut_2800
KEGG: rpb:RPB_1476 hypothetical protein.
  
    0.743
Xaut_2085
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1473 binding-protein-dependent transport systems inner membrane component.
 
    0.604
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.494
nuoH
NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
   
    0.487
Xaut_2799
PFAM: FAD dependent oxidoreductase; KEGG: rpb:RPB_1451 FAD dependent oxidoreductase.
       0.451
Xaut_2083
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rpb:RPB_1475 transcriptional regulator, Crp/Fnr family.
 
   
 0.435
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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