Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2829PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:bll6688 hypothetical protein. (419 aa)    
Predicted Functional Partners:
Xaut_4324
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rpd:RPD_2714 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.600
Xaut_4649
PFAM: Invasion associated locus B family protein; KEGG: bja:bll1169 hypothetical protein.
  
     0.582
Xaut_0510
PFAM: protein of unknown function DUF949; KEGG: bra:BRADO0605 conserved hypothetical protein; putative exported protein; putative transcriptiona regulatory protein at C-terminal.
 
  
 0.578
Xaut_2067
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: rpc:RPC_3978 protein of unknown function DUF882.
 
     0.568
Xaut_3784
PFAM: conserved hypothetical protein; KEGG: bja:blr7254 hypothetical protein.
  
     0.550
Xaut_1636
KEGG: bja:bll5549 hypothetical protein.
  
     0.514
Xaut_0036
KEGG: nha:Nham_1124 hypothetical protein.
  
   
 0.481
Xaut_2068
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: bja:blr7131 hypothetical protein.
 
  
 0.477
Xaut_2202
KEGG: rpc:RPC_4798 hypothetical protein.
  
     0.467
Xaut_2830
Methyltransferase type 11; PFAM: regulatory protein ArsR; UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: bov:BOV_1407 transcriptional regulator, ArsR family.
       0.457
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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