STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2877KEGG: bbt:BBta_7740 hypothetical protein. (143 aa)    
Predicted Functional Partners:
Xaut_2875
KEGG: bbt:BBta_7738 hypothetical protein.
 
     0.919
Xaut_2876
PFAM: TRAG family protein; KEGG: bbt:BBta_7739 putative plasmid transfer factor, TraG protein.
 
     0.901
Xaut_2880
KEGG: mes:Meso_2322 conjugal transfer protein TrbB.
 
     0.810
Xaut_0752
KEGG: bbt:BBta_7738 hypothetical protein.
 
     0.778
Xaut_0588
KEGG: bja:bll0044 hypothetical protein.
 
     0.777
Xaut_0702
KEGG: pde:Pden_1507 hypothetical protein.
 
     0.777
Xaut_4008
KEGG: bja:bll0044 hypothetical protein.
 
     0.777
Xaut_2879
PFAM: Conjugal transfer protein TrbC; KEGG: pde:Pden_1483 conjugal transfer protein TrbC.
 
     0.758
Xaut_0584
KEGG: swi:Swit_3684 hypothetical protein.
 
     0.684
Xaut_0760
Hypothetical protein; KEGG: rpe:RPE_4033 putative transcriptional regulator.
 
   
 0.680
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.