STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2906PFAM: transposase IS3/IS911 family protein; KEGG: mlo:msr5972 transposase. (96 aa)    
Predicted Functional Partners:
Xaut_2905
PFAM: Integrase catalytic region; KEGG: mlo:mlr6150 transposase.
 
  
 0.937
Xaut_4612
Transposase; KEGG: gbe:GbCGDNIH1_1790 transposase.
 
  
 0.721
Xaut_0564
PFAM: Integrase catalytic region; KEGG: gbe:GbCGDNIH1_1790 transposase.
 
  
 0.646
Xaut_0683
PFAM: Integrase catalytic region; KEGG: gbe:GbCGDNIH1_1790 transposase.
 
  
 0.646
Xaut_2665
PFAM: Integrase catalytic region; KEGG: gbe:GbCGDNIH1_1790 transposase.
 
  
 0.646
Xaut_2907
KEGG: mxa:MXAN_3119 hypothetical protein.
       0.529
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.