STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2939PFAM: sulfatase; KEGG: rle:pRL110221 putative arylsulfatase. (556 aa)    
Predicted Functional Partners:
Xaut_2938
KEGG: sme:SMa1682 NapD-like protein.
 
     0.915
Xaut_4691
PFAM: protein of unknown function DUF323; KEGG: nha:Nham_2985 protein of unknown function DUF323.
 
   0.811
Xaut_3412
KEGG: nha:Nham_2981 NapD-like protein.
 
     0.781
Xaut_3410
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpd:RPD_2526 tetratricopeptide TPR_2.
 
 
  0.777
Xaut_3747
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rpd:RPD_3684 protein of unknown function DUF1254.
 
     0.752
Xaut_0593
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: vpa:VPA0735 hypothetical protein.
 
     0.727
Xaut_2937
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rru:Rru_A1029 transcriptional regulator, AraC family.
 
   
 0.691
Xaut_0423
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: sus:Acid_3386 protein of unknown function DUF1214.
 
     0.683
Xaut_0592
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: sme:SMc00478 hypothetical protein.
 
     0.681
Xaut_3413
KEGG: rle:RL1920 hypothetical protein.
 
     0.596
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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