STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2946TIGRFAM: conserved hypothetical membrane protein; KEGG: nha:Nham_3253 double-transmembrane region-like. (943 aa)    
Predicted Functional Partners:
Xaut_2947
PFAM: protein of unknown function DUF58; KEGG: bja:bll2464 hypothetical protein.
 
    0.954
Xaut_2945
KEGG: rpe:RPE_0937 hypothetical protein.
 
     0.935
Xaut_2948
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: rpe:RPE_0940 ATPase associated with various cellular activities, AAA_3.
 
     0.889
Xaut_1882
KEGG: rpa:RPA4739 hypothetical protein.
  
    0.782
Xaut_2949
PFAM: protein of unknown function DUF1285; KEGG: bra:BRADO1965 hypothetical protein.
 
     0.730
Xaut_2063
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: rpe:RPE_4114 tetratricopeptide TPR_2 repeat protein.
  
   
 0.723
Xaut_3794
PFAM: Domain of unknown function DUF1849; KEGG: bbt:BBta_4750 putative exported protein of unknown function.
  
     0.717
Xaut_3442
KEGG: mlo:mll0473 hypothetical protein.
  
 
 0.689
Xaut_2944
PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: bms:BR0695 hypothetical protein.
       0.675
Xaut_1815
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bra:BRADO0046 conserved hypothetical protein; putative transcriptional regulatory protein HTH type.
  
   
 0.662
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.