Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3000TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: bbt:BBta_7745 putative conjugal transfer protein TrbJ. (252 aa)    
Predicted Functional Partners:
Xaut_2995
PFAM: conjugation TrbI family protein; KEGG: gbe:GbCGDNIH1_1064 conjugal transfer protein TrbI.
 
 
 
 0.947
Xaut_2998
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bbt:BBta_7747 putative conjugal transfer protein TrbL.
 
   
 0.947
Xaut_2997
PFAM: Conjugal transfer protein; KEGG: gbe:GbCGDNIH1_1062 conjugal transfer protein TrbF.
 
   
 0.946
Xaut_2999
KEGG: bbt:BBta_7746 hypothetical protein.
 
     0.944
Xaut_3002
KEGG: mes:Meso_2322 conjugal transfer protein TrbB.
 
     0.941
Xaut_3001
SMART: AAA ATPase; KEGG: bbt:BBta_7744 conjugal transfer protein TrbE.
 
 
 
 0.940
Xaut_2996
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:bll8280 probable conjugal transfer protein.
 
   
 0.917
Xaut_3003
PFAM: Conjugal transfer protein TrbC; KEGG: mes:Meso_0508 conjugal transfer protein TrbC.
 
   
 0.895
Xaut_2887
PFAM: conjugation TrbI family protein; KEGG: mes:Meso_0500 conjugation TrbI-like protein.
 
 
 
 0.803
Xaut_0740
PFAM: conjugation TrbI family protein; KEGG: bbt:BBta_7750 putative conjugal transfer protein TrbI.
 
 
 
 0.802
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.