STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3003PFAM: Conjugal transfer protein TrbC; KEGG: mes:Meso_0508 conjugal transfer protein TrbC. (110 aa)    
Predicted Functional Partners:
Xaut_3001
SMART: AAA ATPase; KEGG: bbt:BBta_7744 conjugal transfer protein TrbE.
 
 
 0.951
Xaut_3002
KEGG: mes:Meso_2322 conjugal transfer protein TrbB.
   
 0.950
Xaut_2997
PFAM: Conjugal transfer protein; KEGG: gbe:GbCGDNIH1_1062 conjugal transfer protein TrbF.
 
   
 0.930
Xaut_2998
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bbt:BBta_7747 putative conjugal transfer protein TrbL.
 
   
 0.915
Xaut_3000
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: bbt:BBta_7745 putative conjugal transfer protein TrbJ.
 
   
 0.899
Xaut_3004
TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: bbt:BBta_7741 conjugal transfer protein TrbB.
   
 0.853
Xaut_2996
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:bll8280 probable conjugal transfer protein.
 
   
 0.850
Xaut_0598
SMART: AAA ATPase; KEGG: bbt:BBta_7744 conjugal transfer protein TrbE.
 
 
 0.812
Xaut_0696
SMART: AAA ATPase; KEGG: pde:Pden_0153 AAA ATPase.
 
 
 0.812
Xaut_0746
SMART: AAA ATPase; KEGG: bbt:BBta_7744 conjugal transfer protein TrbE.
 
 
 0.811
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.