STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3114Hypothetical protein. (838 aa)    
Predicted Functional Partners:
Xaut_1960
PFAM: lipopolysaccharide biosynthesis protein; KEGG: rru:Rru_A3715 lipopolysaccharide biosynthesis.
  
     0.706
Xaut_4060
PFAM: Extracellular ligand-binding receptor; KEGG: har:HEAR2682 putative ABC-type branched-chain amino acid transport systems.
  
     0.675
Xaut_4062
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: har:HEAR2680 putative high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) (partial match); Belongs to the binding-protein-dependent transport system permease family.
  
     0.658
Xaut_2277
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: bam:Bamb_4364 outer membrane autotransporter barrel domain.
  
     0.631
Xaut_1952
KEGG: rru:Rru_A3722 hypothetical protein.
  
     0.629
Xaut_4227
PFAM: protein of unknown function DUF214; KEGG: rpc:RPC_3827 protein of unknown function DUF214.
 
     0.580
Xaut_1955
TIGRFAM: methyltransferase FkbM family; KEGG: rru:Rru_A3719 methyltransferase FkbM.
  
     0.573
Xaut_3115
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
   0.558
Xaut_1959
PFAM: polysaccharide export protein; KEGG: rru:Rru_A3716 polysaccharide export protein.
  
     0.535
Xaut_4226
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_3828 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.530
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.