STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3178KEGG: nha:Nham_1435 LipA a lipoprotein. (145 aa)    
Predicted Functional Partners:
Xaut_1466
KEGG: rpd:RPD_0792 hypothetical protein.
  
     0.594
Xaut_3489
KEGG: rpd:RPD_3670 flagellar export FliJ.
  
     0.569
Xaut_3177
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bja:blr3122 two-component sensor histidine kinase.
     
 0.556
Xaut_1477
KEGG: rpd:RPD_1242 hypothetical protein.
 
     0.548
Xaut_1421
PFAM: AsmA family protein; KEGG: rpb:RPB_2027 AsmA.
  
     0.538
Xaut_3232
KEGG: bbt:BBta_5236 hypothetical protein.
  
     0.536
Xaut_0020
PFAM: protein of unknown function DUF218; KEGG: bja:blr1392 hypothetical protein.
  
     0.527
Xaut_2218
KEGG: mes:Meso_3673 hypothetical protein.
  
     0.484
Xaut_2033
PFAM: protein of unknown function DUF1150; KEGG: bbt:BBta_0116 hypothetical protein.
  
     0.474
Xaut_3794
PFAM: Domain of unknown function DUF1849; KEGG: bbt:BBta_4750 putative exported protein of unknown function.
  
     0.467
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.