STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3209PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO2938 putative hydrolase. (250 aa)    
Predicted Functional Partners:
Xaut_3210
KEGG: rpa:RPA3431 hypothetical protein.
       0.778
Xaut_3232
KEGG: bbt:BBta_5236 hypothetical protein.
 
     0.768
Xaut_3489
KEGG: rpd:RPD_3670 flagellar export FliJ.
  
     0.758
Xaut_1636
KEGG: bja:bll5549 hypothetical protein.
  
     0.734
Xaut_4123
KEGG: rpd:RPD_1641 hypothetical protein.
 
 
 
 0.704
Xaut_4649
PFAM: Invasion associated locus B family protein; KEGG: bja:bll1169 hypothetical protein.
  
     0.692
Xaut_3485
PFAM: conserved hypothetical protein; KEGG: rpb:RPB_3924 uncharacterised conserved protein UCP033924.
  
     0.682
Xaut_1466
KEGG: rpd:RPD_0792 hypothetical protein.
  
     0.676
Xaut_1477
KEGG: rpd:RPD_1242 hypothetical protein.
  
     0.670
Xaut_1705
PFAM: alpha/beta hydrolase fold; KEGG: bja:blr0418 putative epoxide hydrolase.
  
     0.668
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.