STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3225KEGG: pna:Pnap_1062 hypothetical protein. (296 aa)    
Predicted Functional Partners:
Xaut_0515
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rpe:RPE_0086 transglutaminase, N-terminal domain protein.
 
     0.635
Xaut_1549
PFAM: transglutaminase domain protein; KEGG: rle:RL2488 hypothetical protein.
  
     0.623
Xaut_1898
KEGG: bbt:BBta_5735 hypothetical protein.
 
    0.460
Xaut_3226
TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A2971 drug resistance transporter Bcr/CflA subfamily.
       0.460
Xaut_1588
PFAM: transglutaminase domain protein; KEGG: chu:CHU_2601 transglutaminase-like enzymes, putative cysteine protease.
  
     0.454
Xaut_0631
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4377 magnesium-translocating P-type ATPase.
   
  
 0.423
Xaut_0997
FHA domain containing protein; PFAM: Forkhead-associated protein; peptidase S1 and S6 chymotrypsin/Hap; KEGG: ava:Ava_0307 FHA domain containing protein.
  
  
 0.416
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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