Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Xaut_1190 | Xaut_3260 | TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: rpc:RPC_3307 cell cycle protein; Belongs to the SEDS family. | TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: rpc:RPC_2543 penicillin-binding protein 1C. | 0.404 |
Xaut_3259 | Xaut_3260 | PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: rpc:RPC_2542 alpha-2-macroglobulin-like. | TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: rpc:RPC_2543 penicillin-binding protein 1C. | 0.967 |
Xaut_3259 | Xaut_3261 | PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: rpc:RPC_2542 alpha-2-macroglobulin-like. | Hypothetical protein. | 0.639 |
Xaut_3260 | Xaut_1190 | TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: rpc:RPC_2543 penicillin-binding protein 1C. | TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: rpc:RPC_3307 cell cycle protein; Belongs to the SEDS family. | 0.404 |
Xaut_3260 | Xaut_3259 | TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: rpc:RPC_2543 penicillin-binding protein 1C. | PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: rpc:RPC_2542 alpha-2-macroglobulin-like. | 0.967 |
Xaut_3260 | Xaut_3261 | TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: rpc:RPC_2543 penicillin-binding protein 1C. | Hypothetical protein. | 0.639 |
Xaut_3261 | Xaut_3259 | Hypothetical protein. | PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: rpc:RPC_2542 alpha-2-macroglobulin-like. | 0.639 |
Xaut_3261 | Xaut_3260 | Hypothetical protein. | TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: rpc:RPC_2543 penicillin-binding protein 1C. | 0.639 |