STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3493PFAM: sodium/calcium exchanger membrane region; KEGG: mlo:mlr6933 probable ionictransporter. (386 aa)    
Predicted Functional Partners:
Xaut_3492
TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mes:Meso_1162 putative agmatinase; Belongs to the arginase family.
     
 0.693
Xaut_3494
PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: nha:Nham_1809 NADH--ubiquinone oxidoreductase 17.2 kD subunit.
       0.651
Xaut_4566
PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: nar:Saro_0395 potassium efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
   
 0.473
Xaut_4650
TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rle:RL0898 putative glutathione-regulated cation-efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
   
 0.469
Xaut_3490
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70 region 4 type 2; KEGG: rpb:RPB_3909 sigma-24 (FecI-like).
       0.457
Xaut_3491
KEGG: lma:LmjF35.0290 hypothetical protein, conserved.
       0.457
Xaut_0631
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4377 magnesium-translocating P-type ATPase.
   
 
 0.418
Xaut_3495
KEGG: rpe:RPE_2995 hypothetical protein.
       0.416
Xaut_0308
TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: bra:BRADO6495 putative ribonuclease BN-like family transmembrane protein.
  
    0.409
Xaut_1896
PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: atc:AGR_C_3833 N-acetylmuramoyl-L-alanine amidase.
  
     0.409
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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