STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3539PFAM: protein of unknown function DUF403; KEGG: bja:blr5613 hypothetical protein. (316 aa)    
Predicted Functional Partners:
Xaut_3540
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpb:RPB_3216 hypothetical protein.
  
 0.970
Xaut_3538
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rpd:RPD_2238 transglutaminase-like.
 
  
 0.911
Xaut_0516
PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpe:RPE_0085 protein of unknown function DUF404.
 
  
 0.904
Xaut_0517
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rpe:RPE_0084 transglutaminase, N-terminal domain protein.
  
 0.889
Xaut_3790
PFAM: 20S proteasome A and B subunits; KEGG: bbt:BBta_5276 hypothetical protein.
 
    0.837
Xaut_1555
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rru:Rru_A2753 transglutaminase-like.
 
  
 0.821
Xaut_1588
PFAM: transglutaminase domain protein; KEGG: chu:CHU_2601 transglutaminase-like enzymes, putative cysteine protease.
 
  
 0.804
Xaut_1549
PFAM: transglutaminase domain protein; KEGG: rle:RL2488 hypothetical protein.
 
  
 0.696
Xaut_0515
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rpe:RPE_0086 transglutaminase, N-terminal domain protein.
 
  
 0.656
Xaut_3541
PFAM: molybdopterin binding domain; KEGG: bja:bll5611 competence-damage associated protein.
       0.414
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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