STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3604Hypothetical protein; KEGG: pde:Pden_3738 transcriptional regulator, fis family. (369 aa)    
Predicted Functional Partners:
Xaut_3605
KEGG: nar:Saro_3021 hypothetical protein.
       0.794
Xaut_3599
KEGG: rsq:Rsph17025_1727 hypothetical protein.
       0.788
Xaut_3601
Hypothetical protein.
       0.779
Xaut_3595
KEGG: mes:Meso_1180 hypothetical protein.
       0.773
Xaut_3596
KEGG: mes:Meso_1181 hypothetical protein.
       0.773
Xaut_3597
Hypothetical protein.
       0.773
Xaut_3598
KEGG: efa:EF2126 hypothetical protein.
       0.773
Xaut_3600
Hypothetical protein.
       0.773
Xaut_3602
PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: mmr:Mmar10_0016 DNA polymerase I.
       0.773
Xaut_3603
Hypothetical protein.
       0.773
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.