STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3762PFAM: AsmA family protein; KEGG: rpa:RPA4157 possible AsmA protein, assembly of outer membrane proteins. (654 aa)    
Predicted Functional Partners:
Xaut_4196
KEGG: rpb:RPB_3001 hypothetical protein.
 
   
 0.719
Xaut_1409
KEGG: bbt:BBta_3054 hypothetical protein.
  
     0.701
Xaut_2732
KEGG: bbt:BBta_1733 putative exported protein of unknown function.
  
     0.685
Xaut_3120
KEGG: bja:bll4077 hypothetical protein.
  
     0.681
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
   
 0.597
Xaut_0036
KEGG: nha:Nham_1124 hypothetical protein.
 
    0.596
Xaut_0395
PFAM: Chorismate mutase; KEGG: rpe:RPE_4341 chorismate mutase.
  
     0.590
Xaut_4297
KEGG: rpc:RPC_2652 hypothetical protein.
  
     0.583
Xaut_4721
KEGG: rpa:RPA1995 hypothetical protein.
  
     0.567
Xaut_3157
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: bja:blr0963 hypothetical protein.
  
     0.539
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.