STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3796Hypothetical protein; KEGG: rru:Rru_A1924 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like. (506 aa)    
Predicted Functional Partners:
Xaut_3797
PFAM: GCN5-related N-acetyltransferase; KEGG: rle:RL2084 putative acetyltransferase.
  
    0.782
Xaut_0473
Membrane protein-like protein; KEGG: bxe:Bxe_B0563 hypothetical protein.
  
    0.772
Xaut_4242
Hypothetical protein; KEGG: rpb:RPB_0310 alginate O-acetyltransferase AlgJ.
 
     0.745
Xaut_1748
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B2660 hypothetical protein.
  
     0.739
Xaut_1749
Hypothetical protein; KEGG: pfo:Pfl_0951 alginate biosynthesis protein AlgJ.
  
     0.731
Xaut_4340
Hypothetical protein; KEGG: rpc:RPC_2684 lipopolysaccharide biosynthesis.
 
   
 0.727
Xaut_1960
PFAM: lipopolysaccharide biosynthesis protein; KEGG: rru:Rru_A3715 lipopolysaccharide biosynthesis.
 
     0.702
Xaut_1036
KEGG: pfl:PFL_4886 hypothetical protein.
  
     0.650
Xaut_2302
PFAM: SMC domain protein; KEGG: swi:Swit_4996 hypothetical protein.
  
     0.646
Xaut_0356
PFAM: Phosphoglycerate mutase; KEGG: ret:RHE_CH00315 hypothetical protein.
 
  
 0.642
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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