Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Xaut_0016 | Xaut_0036 | KEGG: bra:BRADO6465 hypothetical protein. | KEGG: nha:Nham_1124 hypothetical protein. | 0.702 |
Xaut_0016 | Xaut_1407 | KEGG: bra:BRADO6465 hypothetical protein. | PFAM: Peptidoglycan-binding domain 1 protein; KEGG: bra:BRADO2709 conserved hypothetical protein; putative peptidoglycan-binding domain-containing protein. | 0.718 |
Xaut_0016 | Xaut_1626 | KEGG: bra:BRADO6465 hypothetical protein. | TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: rpc:RPC_1847 multi-sensor signal transduction histidine kinase. | 0.454 |
Xaut_0016 | Xaut_2732 | KEGG: bra:BRADO6465 hypothetical protein. | KEGG: bbt:BBta_1733 putative exported protein of unknown function. | 0.745 |
Xaut_0016 | Xaut_3222 | KEGG: bra:BRADO6465 hypothetical protein. | KEGG: nwi:Nwi_1222 hypothetical protein. | 0.713 |
Xaut_0016 | Xaut_3768 | KEGG: bra:BRADO6465 hypothetical protein. | Hypothetical protein; KEGG: rpc:RPC_3941 phasin 2. | 0.453 |
Xaut_0016 | Xaut_3823 | KEGG: bra:BRADO6465 hypothetical protein. | Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. | 0.761 |
Xaut_0016 | Xaut_4123 | KEGG: bra:BRADO6465 hypothetical protein. | KEGG: rpd:RPD_1641 hypothetical protein. | 0.616 |
Xaut_0016 | Xaut_4297 | KEGG: bra:BRADO6465 hypothetical protein. | KEGG: rpc:RPC_2652 hypothetical protein. | 0.712 |
Xaut_0036 | Xaut_0016 | KEGG: nha:Nham_1124 hypothetical protein. | KEGG: bra:BRADO6465 hypothetical protein. | 0.702 |
Xaut_0036 | Xaut_1407 | KEGG: nha:Nham_1124 hypothetical protein. | PFAM: Peptidoglycan-binding domain 1 protein; KEGG: bra:BRADO2709 conserved hypothetical protein; putative peptidoglycan-binding domain-containing protein. | 0.713 |
Xaut_0036 | Xaut_1626 | KEGG: nha:Nham_1124 hypothetical protein. | TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: rpc:RPC_1847 multi-sensor signal transduction histidine kinase. | 0.783 |
Xaut_0036 | Xaut_2033 | KEGG: nha:Nham_1124 hypothetical protein. | PFAM: protein of unknown function DUF1150; KEGG: bbt:BBta_0116 hypothetical protein. | 0.771 |
Xaut_0036 | Xaut_2732 | KEGG: nha:Nham_1124 hypothetical protein. | KEGG: bbt:BBta_1733 putative exported protein of unknown function. | 0.773 |
Xaut_0036 | Xaut_3222 | KEGG: nha:Nham_1124 hypothetical protein. | KEGG: nwi:Nwi_1222 hypothetical protein. | 0.767 |
Xaut_0036 | Xaut_3768 | KEGG: nha:Nham_1124 hypothetical protein. | Hypothetical protein; KEGG: rpc:RPC_3941 phasin 2. | 0.730 |
Xaut_0036 | Xaut_3823 | KEGG: nha:Nham_1124 hypothetical protein. | Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. | 0.772 |
Xaut_0036 | Xaut_4123 | KEGG: nha:Nham_1124 hypothetical protein. | KEGG: rpd:RPD_1641 hypothetical protein. | 0.803 |
Xaut_0036 | Xaut_4297 | KEGG: nha:Nham_1124 hypothetical protein. | KEGG: rpc:RPC_2652 hypothetical protein. | 0.773 |
Xaut_1407 | Xaut_0016 | PFAM: Peptidoglycan-binding domain 1 protein; KEGG: bra:BRADO2709 conserved hypothetical protein; putative peptidoglycan-binding domain-containing protein. | KEGG: bra:BRADO6465 hypothetical protein. | 0.718 |
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