STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3844PFAM: Disulphide bond formation protein DsbB; KEGG: rpd:RPD_0326 hypothetical protein. (162 aa)    
Predicted Functional Partners:
Xaut_0479
DedA family; KEGG: rpe:RPE_0755 DedA family.
      0.834
Xaut_3499
PFAM: DSBA oxidoreductase; KEGG: rpa:RPA2442 putative outer membrane protein.
 
 
 0.675
Xaut_2354
PFAM: protein of unknown function DUF1013; KEGG: bra:BRADO6589 hypothetical protein.
  
     0.659
Xaut_2048
PFAM: import inner membrane translocase subunit Tim44; KEGG: rpe:RPE_0375 import inner membrane translocase, subunit Tim44.
  
     0.626
Xaut_2546
PFAM: Protein of unknown function DUF1790; KEGG: rle:RL3461 hypothetical protein.
  
     0.601
bamD
Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.597
Xaut_1073
PFAM: DSBA oxidoreductase; KEGG: rpc:RPC_4908 DsbA oxidoreductase.
 
 
 0.597
yidC
60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
  
 0.595
Xaut_4471
KEGG: bra:BRADO3535 conserved hypothetical protein; putative alpha/beta hydrolase domain.
 
    0.592
Xaut_1876
PFAM: heat shock protein DnaJ domain protein; KEGG: rpe:RPE_0137 heat shock protein DnaJ domain protein.
  
   
 0.579
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.