STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3874PFAM: Integral membrane protein TerC; KEGG: bra:BRADO3782 conserved hypothetical protein; possibly involved in transport. (253 aa)    
Predicted Functional Partners:
Xaut_1813
PFAM: CBS domain containing protein; transporter-associated region; KEGG: rpd:RPD_0239 putative HlyC/CorC family of transporters.
 
    0.903
Xaut_4139
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: mes:Meso_2122 protein of unknown function DUF21.
 
    0.903
Xaut_3873
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpd:BURPS668_1263 oxidoreductase, short chain dehydrogenase/reductase family.
       0.773
Xaut_3872
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA2674 quinone oxidoreductase.
       0.587
Xaut_3875
TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: bra:BRADO3780 putative FAD-dependent monoxygenase; putative 2-octaprenyl-6-mehtoxyphenol hydroxylase.
       0.459
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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