STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3903PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_3326 ABC transporter related. (257 aa)    
Predicted Functional Partners:
Xaut_3901
PFAM: inner-membrane translocator; KEGG: bov:BOV_1724 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.969
Xaut_3900
PFAM: inner-membrane translocator; KEGG: bov:BOV_1725 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.964
Xaut_1047
PFAM: inner-membrane translocator; KEGG: bbr:BB4293 branched-chain amino acid transport system permease.
  
 0.928
Xaut_0891
PFAM: inner-membrane translocator; KEGG: rpc:RPC_0678 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.926
Xaut_3905
PFAM: Extracellular ligand-binding receptor; KEGG: sme:SMc01946 putative leucine-specific binding protein precursor.
 
  
 0.923
Xaut_0643
PFAM: inner-membrane translocator; KEGG: bja:blr3355 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.916
Xaut_3904
KEGG: mes:Meso_3327 hypothetical protein.
 
     0.905
Xaut_3902
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_3325 ABC transporter related.
 
  
0.897
Xaut_1564
PFAM: inner-membrane translocator; KEGG: bov:BOV_A0337 branched-chain amino acid ABC transporter, permease/ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.861
Xaut_1708
PFAM: inner-membrane translocator; KEGG: vei:Veis_0897 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.858
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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