STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3943KEGG: rpb:RPB_1646 thiol-disulfide isomerase and thioredoxins. (90 aa)    
Predicted Functional Partners:
Xaut_3942
PFAM: permease; KEGG: rpc:RPC_1935 permease.
 
  
 0.954
Xaut_3941
PFAM: regulatory protein ArsR; KEGG: rpd:RPD_3414 regulatory protein, ArsR.
 
   
 0.824
Xaut_3944
PFAM: OsmC family protein; KEGG: bbt:BBta_3653 hypothetical protein.
 
  
 0.820
Xaut_3419
PFAM: permease; KEGG: rpc:RPC_1935 permease.
 
  
 0.808
Xaut_3945
PFAM: Thiolase; KEGG: aeh:Mlg_2706 acetyl-CoA acetyltransferases.
  
 
 0.790
Xaut_3947
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aeh:Mlg_0219 periplasmic sensor signal transduction histidine kinase.
  
 
 0.624
Xaut_1074
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: rpb:RPB_4360 thiol:disulfide interchange protein.
  
 
 0.599
Xaut_2596
Redoxin domain protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.
   
 0.572
Xaut_2363
Peroxidase; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: fjo:Fjoh_5017 peroxidase.
  
 0.565
Xaut_4220
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 0.565
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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