STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4064PFAM: cyclase family protein; KEGG: har:HEAR2678 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Xaut_2398
PFAM: cyclase family protein; KEGG: ppu:PP_3207 cyclase, putative.
  
     0.753
Xaut_4062
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: har:HEAR2680 putative high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) (partial match); Belongs to the binding-protein-dependent transport system permease family.
 
     0.728
Xaut_4061
PFAM: inner-membrane translocator; KEGG: har:HEAR2681 high-affinity branched-chain amino acid transport protein (ABC superfamily, membrane); Belongs to the binding-protein-dependent transport system permease family.
 
     0.698
Xaut_4065
PFAM: Amidase; KEGG: har:HEAR2676 putative amidase.
 
     0.671
Xaut_4060
PFAM: Extracellular ligand-binding receptor; KEGG: har:HEAR2682 putative ABC-type branched-chain amino acid transport systems.
 
     0.659
Xaut_4063
PFAM: ABC transporter related; KEGG: reh:H16_A1709 ABC-type transporter, ATPase component: HAAT family.
  
    0.657
Xaut_2391
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bvi:Bcep1808_1631 glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.464
Xaut_2389
KEGG: ppu:PP_3195 hypothetical protein.
 
     0.447
Xaut_0950
PFAM: Cupin 2 conserved barrel domain protein; KEGG: rfr:Rfer_3146 cupin 2 protein.
  
    0.441
Xaut_4743
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pol:Bpro_0361 cupin 2, conserved barrel.
  
    0.441
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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