Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Xaut_4100PFAM: dihydropteroate synthase DHPS; KEGG: mca:MCA1245 pterin-binding domain protein. (472 aa)    
Predicted Functional Partners:
Xaut_4099
KEGG: bxe:Bxe_B2455 hypothetical protein.
     0.973
Xaut_4102
KEGG: gbe:GbCGDNIH1_0763 amino acid kinase family protein.
 
     0.954
Xaut_4098
PFAM: protein of unknown function DUF556; KEGG: gbe:GbCGDNIH1_0762 dihydroneopterin aldolase.
 
     0.953
Xaut_4101
PFAM: flavoprotein; KEGG: gbe:GbCGDNIH1_0764 flavoprotein.
 
     0.952
folE
PFAM: GTP cyclohydrolase I; KEGG: bra:BRADO2984 GTP cyclohydrolase I.
  
  
 0.857
Xaut_3529
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
  
  
 0.857
Xaut_2492
TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: mlo:mll0786 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase.
  
  
 0.856
Xaut_3535
TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: mca:MCA2861 kinase, GHMP family, putative.
 
     0.789
Xaut_1795
PFAM: Amidohydrolase 3; KEGG: mca:MCA2859 formylmethanofurane dehydrogenase, A subunit, putative.
 
     0.788
Xaut_1796
KEGG: mca:MCA2860 formylmethanofuran dehydrogenase.
 
     0.788
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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