STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4100PFAM: dihydropteroate synthase DHPS; KEGG: mca:MCA1245 pterin-binding domain protein. (472 aa)    
Predicted Functional Partners:
Xaut_4099
KEGG: bxe:Bxe_B2455 hypothetical protein.
   
 0.972
Xaut_4098
PFAM: protein of unknown function DUF556; KEGG: gbe:GbCGDNIH1_0762 dihydroneopterin aldolase.
 
   
 0.956
Xaut_4102
KEGG: gbe:GbCGDNIH1_0763 amino acid kinase family protein.
 
   
 0.956
Xaut_4101
PFAM: flavoprotein; KEGG: gbe:GbCGDNIH1_0764 flavoprotein.
 
     0.951
folE
PFAM: GTP cyclohydrolase I; KEGG: bra:BRADO2984 GTP cyclohydrolase I.
  
  
 0.803
Xaut_2492
TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: mlo:mll0786 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase.
  
  
 0.803
Xaut_3529
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
  
  
 0.803
Xaut_1796
KEGG: mca:MCA2860 formylmethanofuran dehydrogenase.
 
   
 0.799
Xaut_1791
KEGG: mca:MCA2869 S-layer protein, putative.
  
   
 0.792
ffsA
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
   
 0.790
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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