STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4115PFAM: Mammalian cell entry related domain protein; KEGG: bja:bll5892 hypothetical protein. (307 aa)    
Predicted Functional Partners:
Xaut_4113
PFAM: protein of unknown function DUF140; KEGG: nha:Nham_1315 protein of unknown function DUF140.
 
 0.999
Xaut_4114
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA3962 ATP-binding component of ABC transporter.
 0.998
Xaut_4116
PFAM: protein of unknown function DUF330; KEGG: bov:BOV_0989 putative lipoprotein.
   0.983
Xaut_0998
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pth:PTH_2272 anti-anti-sigma regulatory factor.
  
   0.650
Xaut_2002
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: swi:Swit_1492 anti-sigma-factor antagonist.
  
   0.650
Xaut_2529
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb3519 anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family.
  
   0.650
cysC
Sulfate adenylyltransferase, large subunit; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family.
  
  
 0.603
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
   
 0.476
Xaut_4112
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rpc:RPC_1451 mandelate racemase/muconate lactonizing enzyme.
       0.466
Xaut_0846
PFAM: OmpA/MotB domain protein; KEGG: nha:Nham_3542 OmpA/MotB.
   
   0.447
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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