STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4125PFAM: protein of unknown function DUF1058; KEGG: rpd:RPD_0218 protein of unknown function DUF1058. (183 aa)    
Predicted Functional Partners:
Xaut_1418
PFAM: protein of unknown function DUF1321; KEGG: rpd:RPD_3359 protein of unknown function DUF1321.
  
     0.746
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.722
Xaut_2066
KEGG: rpe:RPE_4107 hypothetical protein; Belongs to the UPF0335 family.
  
     0.719
Xaut_3694
KEGG: rpe:RPE_4107 hypothetical protein; Belongs to the UPF0335 family.
  
     0.717
Xaut_3299
TIGRFAM: Double-strand break repair protein AddB; KEGG: bbt:BBta_0089 putative helicase-exonuclease type V protein family, AddB subunit.
  
     0.692
Xaut_4381
PFAM: SmpA/OmlA domain protein; KEGG: nha:Nham_1582 SmpA/OmlA.
  
     0.690
atpF1
H+transporting two-sector ATPase B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.688
Xaut_2354
PFAM: protein of unknown function DUF1013; KEGG: bra:BRADO6589 hypothetical protein.
  
     0.678
Xaut_1808
PFAM: Glutathione S-transferase domain; KEGG: nha:Nham_0185 glutathione S-transferase-like.
  
    0.673
Xaut_1459
PFAM: DNA polymerase III chi subunit HolC; KEGG: rpa:RPA3059 DNA polymerase III chi subunit.
  
     0.659
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.