STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4132PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bra:BRADO6503 putative ABC transporter (ATP-binding protein). (328 aa)    
Predicted Functional Partners:
Xaut_1709
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0898 ABC transporter related.
    
0.925
Xaut_4131
PFAM: ABC-2 type transporter; KEGG: bra:BRADO6504 putative ABC transporter (permease protein).
 
  
 0.885
Xaut_0458
PFAM: ABC-2 type transporter; KEGG: rpb:RPB_3666 ABC-2.
 
  
 0.875
Xaut_4133
PFAM: Polyprenyl synthetase; KEGG: psa:PST_3877 geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
 
   
 0.814
phnC
Phosphonate ABC transporter, ATPase subunit; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
    
0.736
Xaut_0007
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0898 ABC transporter related.
    
0.731
Xaut_1565
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_0114 ABC transporter related.
    
0.673
cysS
TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; KEGG: bbt:BBta_3498 cysteine tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   
 0.657
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.656
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.618
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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