STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4150PFAM: inner-membrane translocator; KEGG: rpe:RPE_3740 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (545 aa)    
Predicted Functional Partners:
Xaut_4151
PFAM: inner-membrane translocator; KEGG: bja:blr1450 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
Xaut_4152
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_3738 ABC transporter related.
 
 0.995
Xaut_4153
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_3506 ABC transporter related.
 
 
 0.995
Xaut_4149
KEGG: rpa:RPA3669 putative urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor.
 
 
 0.991
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.913
ureB
TIGRFAM: urease, beta subunit; urease, gamma subunit; PFAM: Urease beta subunit; Urease gamma subunit region; KEGG: dra:DRA0319 urease, beta/gamma subunit; Belongs to the urease beta subunit family.
 
  
 0.807
ureC
TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; Amidohydrolase 3; KEGG: rpc:RPC_3692 urease, alpha subunit.
 
   
 0.688
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.643
Xaut_1575
PFAM: inner-membrane translocator; KEGG: bov:BOV_A0023 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.591
Xaut_1618
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bme:BMEII0874 high-affinity branched-chain amino acid transport system permease protein LivH / high-affinity branched-chain amino acid transport ATP-binding protein LivG.
  
  
 0.568
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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