STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4298PFAM: O-methyltransferase family 3; KEGG: mlo:mlr0279 O-methyltransferase. (221 aa)    
Predicted Functional Partners:
Xaut_2437
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sil:SPO2417 gluconate 5-dehydrogenase.
  
 
 0.743
Xaut_1615
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: short chain dehydrogenase.
  
 
 0.726
Xaut_2348
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_1480 short-chain dehydrogenase/reductase SDR.
  
 
 0.695
Xaut_1138
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reu:Reut_C6036 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR.
  
 
 0.691
Xaut_1622
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bov:BOV_A0339 putative 3-oxoacyl-(acyl-carrier protein) reductase.
  
 
 0.684
Xaut_2691
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2712 short-chain dehydrogenase/reductase SDR.
  
 
 0.678
Xaut_1907
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpa:RPA3474 putative 3-oxoacyl-acyl carrier protein reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.655
Xaut_1358
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pde:Pden_1255 short-chain dehydrogenase/reductase SDR.
  
 
 0.645
Xaut_3115
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.618
Xaut_2759
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr7165 oxidoreductase.
  
 
 0.613
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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