STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4331PFAM: CoA-binding domain protein; KEGG: mlo:mlr8464 hypothetical protein. (182 aa)    
Predicted Functional Partners:
Xaut_4332
O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rpe:RPE_2853 O-acetylhomoserine/O-acetylserine sulfhydrylase.
      0.956
Xaut_4333
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mes:Meso_1167 O-acetylhomoserine/O-acetylserine sulfhydrylase.
      0.907
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
      0.821
Xaut_4330
TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: mlo:mll0418 putative deoxyribonuclease.
       0.774
Xaut_1945
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mes:Meso_1165 glyoxalase/bleomycin resistance protein/dioxygenase.
      0.599
Xaut_4329
PFAM: BioY protein; KEGG: mlo:mlr7429 bioY protein.
       0.548
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: bra:BRADO0039 ferric uptake regulation protein (ferric uptake regulator, Fur family); Belongs to the Fur family.
  
    0.525
Xaut_1888
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: nha:Nham_0618 putative ferric uptake regulator, FUR family; Belongs to the Fur family.
  
    0.525
Xaut_3845
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rpb:RPB_0614 ferric uptake regulator, FUR family; Belongs to the Fur family.
  
    0.525
msrB
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: mes:Meso_0863 methionine-R-sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
 
      0.451
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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