STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4382PFAM: Ubiquinol-cytochrome C chaperone; KEGG: nwi:Nwi_1404 ubiquinol-cytochrome c chaperone. (201 aa)    
Predicted Functional Partners:
Xaut_4383
KEGG: bra:BRADO4419 hypothetical protein.
 
     0.837
Xaut_4236
KEGG: rpa:RPA2582 hypothetical protein.
  
     0.724
Xaut_2092
KEGG: rpd:RPD_0169 hypothetical protein.
  
     0.650
Xaut_4381
PFAM: SmpA/OmlA domain protein; KEGG: nha:Nham_1582 SmpA/OmlA.
 
     0.642
Xaut_0317
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bov:BOV_A0838 hypothetical protein.
  
     0.597
plsX
Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
       0.527
Xaut_1232
PFAM: conserved hypothetical protein; KEGG: bmb:BruAb1_0279 hypothetical protein; Belongs to the UPF0262 family.
  
     0.513
Xaut_4246
PFAM: Sporulation domain protein; KEGG: nha:Nham_1759 sporulation related.
  
     0.501
fabH
3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
       0.497
Xaut_0415
PFAM: protein of unknown function DUF983; KEGG: ret:RHE_CH01276 hypothetical protein.
  
     0.489
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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