STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4530Putative transcriptional regulator, Nlp; KEGG: yen:YE1026A putative DNA-binding protein. (112 aa)    
Predicted Functional Partners:
Xaut_4529
PFAM: ParB domain protein nuclease; KEGG: rsq:Rsph17025_2122 ParB domain protein nuclease.
 
     0.823
Xaut_4520
KEGG: rsq:Rsph17025_2116 hypothetical protein.
 
    0.659
Xaut_4524
PFAM: B transposition protein domain protein; KEGG: ecs:ECs4946 putative DNA transposition protein.
 
   
 0.651
Xaut_4525
PFAM: Mu transposase; Mu DNA binding I gamma subdomain; Transposase-like Mu; KEGG: rsq:Rsph17025_2121 integrase, catalytic region.
 
   
 0.608
Xaut_4531
PFAM: helix-turn-helix domain protein; KEGG: mag:amb0443 hypothetical protein.
       0.478
Xaut_4532
KEGG: rpa:RPA3563 hypothetical protein.
       0.463
Xaut_4528
Hypothetical protein.
       0.458
Xaut_4497
KEGG: rsq:Rsph17025_2096 Mu-like prophage major head subunit gpT-like protein.
  
   
 0.437
Xaut_4512
PFAM: protein of unknown function DUF1018; KEGG: mag:amb1752 Mu-like prophage protein GP16.
 
     0.435
Xaut_4502
PFAM: protein of unknown function DUF935; KEGG: rsq:Rsph17025_2101 protein of unknown function DUF935.
 
   
 0.424
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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