STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4591TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nwi:Nwi_3131 heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1055 aa)    
Predicted Functional Partners:
Xaut_4592
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nwi:Nwi_3130 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.969
Xaut_3972
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nwi:Nwi_3131 heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  
 
0.900
Xaut_3973
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nwi:Nwi_3130 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.877
Xaut_4593
KEGG: nwi:Nwi_3129 hypothetical protein.
  
 
 0.838
Xaut_0616
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpa:RPA2055 possible RND divalent metal cation efflux membrane fusion protein CzcB precursor.
 
 
 0.834
Xaut_3982
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpa:RPA2055 possible RND divalent metal cation efflux membrane fusion protein CzcB precursor.
 
 
 0.834
Xaut_3981
PFAM: outer membrane efflux protein; KEGG: bbt:BBta_7266 putative outer membrane cobalt-zinc-cadmium resistance protein CzcC precursor.
 
  
 0.797
Xaut_0617
PFAM: outer membrane efflux protein; KEGG: nha:Nham_4530 outer membrane efflux protein.
 
  
 0.789
Xaut_4590
PFAM: protein of unknown function DUF411; KEGG: nwi:Nwi_3132 protein of unknown function DUF411.
 
     0.587
Xaut_4604
KEGG: bbt:BBta_p0116 hypothetical protein.
 
  
 0.531
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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