STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4609PFAM: IS66 Orf2 family protein; KEGG: mag:amb0402 transposase and inactivated derivative. (115 aa)    
Predicted Functional Partners:
Xaut_4608
PFAM: transposase IS66; KEGG: mag:amb3325 transposase and inactivated derivative.
   
 0.932
Xaut_4607
KEGG: mag:amb3325 transposase and inactivated derivative.
   
 0.880
Xaut_4598
PFAM: transposase IS66; KEGG: bja:bll2159 putative transposase.
   
 0.794
Xaut_2254
PFAM: transposase IS66; KEGG: ret:RHE_PA00101 putative insertion sequence transposase protein, IS66 family.
   
 0.791
Xaut_4610
PFAM: transposase IS3/IS911 family protein; KEGG: bra:BRADO6435 putative transposase from insertion sequence.
       0.773
Xaut_4606
PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: rru:Rru_A0351 hypothetical protein.
 
     0.590
Xaut_4596
PFAM: transposase IS3/IS911 family protein; KEGG: rle:pRL70042 putative insertion sequence protein.
 
  
 0.411
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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