STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4616PFAM: protein of unknown function DUF1467; KEGG: nha:Nham_2203 protein of unknown function DUF1467. (90 aa)    
Predicted Functional Partners:
Xaut_1631
KEGG: bja:bll0688 hypothetical protein.
  
     0.735
Xaut_4642
PFAM: protein of unknown function DUF983; KEGG: atc:AGR_C_1409 hypothetical protein.
  
     0.714
Xaut_0415
PFAM: protein of unknown function DUF983; KEGG: ret:RHE_CH01276 hypothetical protein.
  
     0.634
Xaut_1230
KEGG: bov:BOV_0271 hypothetical protein.
  
     0.597
Xaut_3863
PFAM: protein of unknown function DUF983; KEGG: rpe:RPE_3381 protein of unknown function DUF983.
  
     0.597
Xaut_4617
Methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mag:amb2575 lactoylglutathione lyase and related lyase.
       0.563
Xaut_0305
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_0230 periplasmic sensor signal transduction histidine kinase.
  
     0.532
Xaut_0214
Pyruvate dehydrogenase (acetyl-transferring); Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
     0.512
Xaut_0073
PFAM: Chromosomal replication initiator DnaA domain; KEGG: hne:HNE_0741 DnaA domain protein.
  
     0.492
Xaut_4618
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bja:bll4902 hypothetical protein.
       0.436
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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