STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4617Methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mag:amb2575 lactoylglutathione lyase and related lyase. (134 aa)    
Predicted Functional Partners:
Xaut_4725
PFAM: carboxyl transferase; KEGG: bbt:BBta_5024 putative propionyl-CoA carboxylase beta chain.
 
 
 0.989
Xaut_4731
TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; KEGG: bbt:BBta_3021 methylmalonyl-CoA mutase large subunit (MCM-alpha).
 
  
 0.987
Xaut_1197
TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; KEGG: rru:Rru_A3062 methylmalonyl-CoA mutase-like.
  
 0.986
Xaut_4729
PFAM: methylmalonyl-CoA mutase; KEGG: bja:bll3056 probable methylmalonyl-CoA mutase small subunit.
 
  
 0.976
Xaut_4726
Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: bbt:BBta_4902 putative acyl-CoA carboxylase biotin-carrying subunit.
  
 
 0.943
Xaut_1195
TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsq:Rsph17025_3009 crotonyl-CoA reductase.
     
 0.906
Xaut_0518
PFAM: AMP-dependent synthetase and ligase; KEGG: mes:Meso_1586 AMP-dependent synthetase and ligase.
     
 0.904
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
 
 0.882
Xaut_1857
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: bxe:Bxe_B0961 propionyl-CoA carboxylase.
  
 
 0.813
Xaut_2490
TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: rpb:RPB_3542 LAO/AO transport system ATPase.
 
   
 0.786
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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