STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4724PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: sme:SMb20754 hypothetical protein. (474 aa)    
Predicted Functional Partners:
Xaut_4725
PFAM: carboxyl transferase; KEGG: bbt:BBta_5024 putative propionyl-CoA carboxylase beta chain.
     
 0.617
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
   
 0.554
Xaut_4723
PFAM: SH3 type 3 domain protein; KEGG: mgr:MGG_14095 hypothetical protein.
     
 0.552
Xaut_1347
PFAM: MmgE/PrpD family protein; KEGG: rpd:RPD_0146 MmgE/PrpD.
  
  
 0.523
Xaut_1964
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: sme:SMc02466 probable succinate dehydrogenase iron-sulfur protein.
     
 0.456
Xaut_1010
PFAM: condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mva:Mvan_1003 beta-ketoacyl synthase.
  
  
 0.436
Xaut_1007
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; KEGG: mxa:MXAN_4526 polyketide synthase type I.
  
  
 0.433
Xaut_1376
PFAM: peptidase S49; KEGG: nwi:Nwi_2589 peptidase S49.
 
     0.408
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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