STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BIGA_0503Transcriptional regulator. (486 aa)    
Predicted Functional Partners:
BIGA_0504
Hypothetical protein.
 
   
0.837
BIGA_0500
Hypothetical protein.
 
     0.666
BIGA_0501
Glycosyltransferase.
 
     0.665
whiB
WhiB-type transcription regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.649
whiB-2
WhmD; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.571
BIGA_0666
DNA polymerase III epsilon subunit-like 3'-5' exonuclease.
  
     0.563
BIGA_0864
Transcriptional regulator containing cell envelope-related transcriptional attenuator domain.
 
   
0.535
sepF
Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
   
 0.496
BIGA_0505
FtsK/SpoIIIE family protein.
  
  
 0.494
raiA
Putative ribosome-associated protein Y (PSrp-1); Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
 
     0.468
Your Current Organism:
Bifidobacterium gallinarum
NCBI taxonomy Id: 78344
Other names: AS 1.2283, ATCC 33777, B. gallinarum, BCRC 14679, CCRC 14679, CCRC:14679, CCUG 34990, DSM 20670, JCM 6291, LMG 11586, LMG:11586, strain Ch206-5
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