Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BIGA_0283 | adhE | BIGA_0283 | BIGA_0985 | Pyridine nucleotide-disulfide oxidoreductase family protein. | Bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.711 |
BIGA_0283 | gltB | BIGA_0283 | BIGA_0069 | Pyridine nucleotide-disulfide oxidoreductase family protein. | Glutamate synthase large subunit. | 0.808 |
BIGA_0469 | BIGA_1046 | BIGA_0469 | BIGA_1046 | Phosphate acetyltransferase. | JadJ. | 0.909 |
BIGA_0469 | BIGA_1330 | BIGA_0469 | BIGA_1330 | Phosphate acetyltransferase. | Fatty aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.833 |
BIGA_0469 | adhE | BIGA_0469 | BIGA_0985 | Phosphate acetyltransferase. | Bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.943 |
BIGA_0469 | leuA | BIGA_0469 | BIGA_1148 | Phosphate acetyltransferase. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.906 |
BIGA_0469 | pflB | BIGA_0469 | BIGA_0580 | Phosphate acetyltransferase. | Formate acetyltransferase. | 0.917 |
BIGA_0469 | sucC | BIGA_0469 | BIGA_0152 | Phosphate acetyltransferase. | succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.836 |
BIGA_0469 | sucD | BIGA_0469 | BIGA_0153 | Phosphate acetyltransferase. | succinyl-CoA synthetase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.837 |
BIGA_1046 | BIGA_0469 | BIGA_1046 | BIGA_0469 | JadJ. | Phosphate acetyltransferase. | 0.909 |
BIGA_1046 | BIGA_1330 | BIGA_1046 | BIGA_1330 | JadJ. | Fatty aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.821 |
BIGA_1046 | adhE | BIGA_1046 | BIGA_0985 | JadJ. | Bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.925 |
BIGA_1046 | leuA | BIGA_1046 | BIGA_1148 | JadJ. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.958 |
BIGA_1046 | pflB | BIGA_1046 | BIGA_0580 | JadJ. | Formate acetyltransferase. | 0.900 |
BIGA_1046 | sucC | BIGA_1046 | BIGA_0152 | JadJ. | succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.838 |
BIGA_1046 | sucD | BIGA_1046 | BIGA_0153 | JadJ. | succinyl-CoA synthetase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.823 |
BIGA_1330 | BIGA_0469 | BIGA_1330 | BIGA_0469 | Fatty aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Phosphate acetyltransferase. | 0.833 |
BIGA_1330 | BIGA_1046 | BIGA_1330 | BIGA_1046 | Fatty aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | JadJ. | 0.821 |
BIGA_1330 | adhE | BIGA_1330 | BIGA_0985 | Fatty aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.930 |
BIGA_1330 | gltB | BIGA_1330 | BIGA_0069 | Fatty aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Glutamate synthase large subunit. | 0.900 |
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