STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BIGA_1726Transmembrane permease MsmF. (306 aa)    
Predicted Functional Partners:
BIGA_1725
Sugar ABC transporter binding protein.
   0.977
BIGA_1727
Sn-glycerol-3-phosphate-binding protein.
   0.972
ugpC
Sugars ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.945
BIGA_1138
Sugar permease of ABC transporter system.
   0.896
BIGA_1205
Sugar ABC transporter, permease-like protein.
   0.896
BIGA_1429
ABC transporter membrane spanning protein.
   0.874
BIGA_0411
Sugar ABC transporter permease.
 
   0.807
BIGA_1214
Maltose/maltodextrin ABC transporter.
 
0.761
BIGA_1140
ABC-type sugar transport system, periplasmic component.
 
   0.751
BIGA_1216
Family 1 extracellular solute-binding protein.
  
 
 0.726
Your Current Organism:
Bifidobacterium gallinarum
NCBI taxonomy Id: 78344
Other names: AS 1.2283, ATCC 33777, B. gallinarum, BCRC 14679, CCRC 14679, CCRC:14679, CCUG 34990, DSM 20670, JCM 6291, LMG 11586, LMG:11586, strain Ch206-5
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