STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BIGA_1748Rhamnose biosynthesis dTDP-glucose 4,6-dehydratase. (340 aa)    
Predicted Functional Partners:
BIGA_0352
dTDP-4-dehydrorhamnose reductase.
 
  
 0.993
BIGA_0348
dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase.
  
  
 0.992
BIGA_0882
Flippase Wzx.
  
  
 0.721
BIGA_0353
Glucose-1-phosphate thymidylyltransferase.
  
  
 0.602
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.602
glf
UDP-galactopyranose mutase.
  
  
 0.581
BIGA_1749
Mutator type transposase.
       0.505
BIGA_1750
Transposase.
       0.505
BIGA_0417
Oxidoreductase.
  
  
 0.483
galT
Galactose-1-phosphate uridylyltransferase.
   
  
 0.424
Your Current Organism:
Bifidobacterium gallinarum
NCBI taxonomy Id: 78344
Other names: AS 1.2283, ATCC 33777, B. gallinarum, BCRC 14679, CCRC 14679, CCRC:14679, CCUG 34990, DSM 20670, JCM 6291, LMG 11586, LMG:11586, strain Ch206-5
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