Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BMERY_0130 | BMERY_0131 | BMERY_0130 | BMERY_0131 | Glycosyltransferase. | Exodeoxyribonuclease III. | 0.496 |
BMERY_0130 | BMERY_0465 | BMERY_0130 | BMERY_0465 | Glycosyltransferase. | Hypothetical protein. | 0.447 |
BMERY_0130 | BMERY_1190 | BMERY_0130 | BMERY_1190 | Glycosyltransferase. | Hypothetical protein. | 0.447 |
BMERY_0130 | BMERY_1687 | BMERY_0130 | BMERY_1687 | Glycosyltransferase. | Peptidoglycan N-acetylglucosamine deacetylase A. | 0.508 |
BMERY_0130 | BMERY_1866 | BMERY_0130 | BMERY_1866 | Glycosyltransferase. | Nucleoside-diphosphate-sugar epimerase family protein. | 0.449 |
BMERY_0130 | BMERY_1868 | BMERY_0130 | BMERY_1868 | Glycosyltransferase. | RmlC/RmlD dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.429 |
BMERY_0130 | fmt | BMERY_0130 | BMERY_0997 | Glycosyltransferase. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.531 |
BMERY_0131 | BMERY_0130 | BMERY_0131 | BMERY_0130 | Exodeoxyribonuclease III. | Glycosyltransferase. | 0.496 |
BMERY_0465 | BMERY_0130 | BMERY_0465 | BMERY_0130 | Hypothetical protein. | Glycosyltransferase. | 0.447 |
BMERY_0465 | BMERY_1868 | BMERY_0465 | BMERY_1868 | Hypothetical protein. | RmlC/RmlD dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.946 |
BMERY_1190 | BMERY_0130 | BMERY_1190 | BMERY_0130 | Hypothetical protein. | Glycosyltransferase. | 0.447 |
BMERY_1190 | BMERY_1868 | BMERY_1190 | BMERY_1868 | Hypothetical protein. | RmlC/RmlD dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.946 |
BMERY_1687 | BMERY_0130 | BMERY_1687 | BMERY_0130 | Peptidoglycan N-acetylglucosamine deacetylase A. | Glycosyltransferase. | 0.508 |
BMERY_1866 | BMERY_0130 | BMERY_1866 | BMERY_0130 | Nucleoside-diphosphate-sugar epimerase family protein. | Glycosyltransferase. | 0.449 |
BMERY_1866 | BMERY_1868 | BMERY_1866 | BMERY_1868 | Nucleoside-diphosphate-sugar epimerase family protein. | RmlC/RmlD dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.965 |
BMERY_1868 | BMERY_0130 | BMERY_1868 | BMERY_0130 | RmlC/RmlD dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | Glycosyltransferase. | 0.429 |
BMERY_1868 | BMERY_0465 | BMERY_1868 | BMERY_0465 | RmlC/RmlD dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | Hypothetical protein. | 0.946 |
BMERY_1868 | BMERY_1190 | BMERY_1868 | BMERY_1190 | RmlC/RmlD dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | Hypothetical protein. | 0.946 |
BMERY_1868 | BMERY_1866 | BMERY_1868 | BMERY_1866 | RmlC/RmlD dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | Nucleoside-diphosphate-sugar epimerase family protein. | 0.965 |
fmt | BMERY_0130 | BMERY_0997 | BMERY_0130 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Glycosyltransferase. | 0.531 |