Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BMERY_0331T/U mismatch-specific DNA glycosylase. (186 aa)    
Predicted Functional Partners:
BMERY_1303
A/G-specific adenine glycosylase.
    
 0.834
crcB
CrcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.752
crcB-2
Putative camphor resistance protein CrcB2; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.752
BMERY_0418
Putative protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
      0.747
folD
Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
     
  0.537
BMERY_0131
Exodeoxyribonuclease III.
    
 0.525
BMERY_0563
Hypothetical protein.
  
     0.496
BMERY_0328
TetR family Transcriptional regulator.
       0.435
BMERY_1828
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
     
  0.421
Your Current Organism:
Bifidobacterium merycicum
NCBI taxonomy Id: 78345
Other names: AS 1.2273, ATCC 49391, B. merycicum, CCUG 34976, DSM 6492, JCM 8219, LMG 11341, LMG:11341, strain Ru915B
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