Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BMERY_0112 | BMERY_0757 | BMERY_0112 | BMERY_0757 | Cysteine desulfurase. | SUF system FeS assembly protein, NifU family. | 0.999 |
BMERY_0112 | BMERY_0758 | BMERY_0112 | BMERY_0758 | Cysteine desulfurase. | Cysteine desulfurase/Selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | 0.848 |
BMERY_0112 | BMERY_0759 | BMERY_0112 | BMERY_0759 | Cysteine desulfurase. | ABC transporter ATP-binding protein. | 0.633 |
BMERY_0112 | BMERY_0760 | BMERY_0112 | BMERY_0760 | Cysteine desulfurase. | FeS assembly protein SufD. | 0.582 |
BMERY_0112 | BMERY_0761 | BMERY_0112 | BMERY_0761 | Cysteine desulfurase. | ABC transporter. | 0.582 |
BMERY_0756 | BMERY_0757 | BMERY_0756 | BMERY_0757 | FeS assembly SUF system domain. | SUF system FeS assembly protein, NifU family. | 0.987 |
BMERY_0756 | BMERY_0758 | BMERY_0756 | BMERY_0758 | FeS assembly SUF system domain. | Cysteine desulfurase/Selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | 0.905 |
BMERY_0756 | BMERY_0759 | BMERY_0756 | BMERY_0759 | FeS assembly SUF system domain. | ABC transporter ATP-binding protein. | 0.870 |
BMERY_0756 | BMERY_0760 | BMERY_0756 | BMERY_0760 | FeS assembly SUF system domain. | FeS assembly protein SufD. | 0.868 |
BMERY_0756 | BMERY_0761 | BMERY_0756 | BMERY_0761 | FeS assembly SUF system domain. | ABC transporter. | 0.862 |
BMERY_0756 | pyrG | BMERY_0756 | BMERY_0762 | FeS assembly SUF system domain. | CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.564 |
BMERY_0757 | BMERY_0112 | BMERY_0757 | BMERY_0112 | SUF system FeS assembly protein, NifU family. | Cysteine desulfurase. | 0.999 |
BMERY_0757 | BMERY_0756 | BMERY_0757 | BMERY_0756 | SUF system FeS assembly protein, NifU family. | FeS assembly SUF system domain. | 0.987 |
BMERY_0757 | BMERY_0758 | BMERY_0757 | BMERY_0758 | SUF system FeS assembly protein, NifU family. | Cysteine desulfurase/Selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | 0.999 |
BMERY_0757 | BMERY_0759 | BMERY_0757 | BMERY_0759 | SUF system FeS assembly protein, NifU family. | ABC transporter ATP-binding protein. | 0.996 |
BMERY_0757 | BMERY_0760 | BMERY_0757 | BMERY_0760 | SUF system FeS assembly protein, NifU family. | FeS assembly protein SufD. | 0.980 |
BMERY_0757 | BMERY_0761 | BMERY_0757 | BMERY_0761 | SUF system FeS assembly protein, NifU family. | ABC transporter. | 0.978 |
BMERY_0757 | pyrG | BMERY_0757 | BMERY_0762 | SUF system FeS assembly protein, NifU family. | CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.609 |
BMERY_0758 | BMERY_0112 | BMERY_0758 | BMERY_0112 | Cysteine desulfurase/Selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | Cysteine desulfurase. | 0.848 |
BMERY_0758 | BMERY_0756 | BMERY_0758 | BMERY_0756 | Cysteine desulfurase/Selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | FeS assembly SUF system domain. | 0.905 |
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