STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMERY_1007DNA mismatch endonuclease Vsr; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination. (156 aa)    
Predicted Functional Partners:
BMERY_0176
DNA-cytosine methyltransferase.
 
   
 0.800
BMERY_0177
DNA mismatch repair protein MutH.
 
   
 0.616
BMERY_0175
DNA mismatch repair enzyme MutH family protein.
 
   
 0.509
BMERY_1006
Adenylosuccinate lyase.
       0.503
BMERY_1005
Hypothetical protein.
       0.485
BMERY_1288
Oxidoreductase domain-containing protein.
       0.428
BMERY_0193
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.426
BMERY_1008
GNAT family acetyltransferase.
       0.409
BMERY_1009
Major facilitator family transporter.
       0.409
Your Current Organism:
Bifidobacterium merycicum
NCBI taxonomy Id: 78345
Other names: AS 1.2273, ATCC 49391, B. merycicum, CCUG 34976, DSM 6492, JCM 8219, LMG 11341, LMG:11341, strain Ru915B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.