Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BMERY_1069ROK family protein. (256 aa)    
Predicted Functional Partners:
BMERY_1378
PTS system mannose-specific transporter subunit IIBCA.
  
 0.970
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
 
 
 0.909
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.901
BMERY_1379
Phosphoglucomutase.
    
 0.868
BMERY_1029
Aldose 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family.
    
 0.862
BMERY_0088
Aldose 1-epimerase.
    
 0.861
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
    
 0.861
BMERY_0466
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
    
 0.860
BMERY_0308
Transketolase; Belongs to the transketolase family.
   
 
 0.859
BMERY_0958
Putative phosphoketolase.
     
 0.858
Your Current Organism:
Bifidobacterium merycicum
NCBI taxonomy Id: 78345
Other names: AS 1.2273, ATCC 49391, B. merycicum, CCUG 34976, DSM 6492, JCM 8219, LMG 11341, LMG:11341, strain Ru915B
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