Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BMERY_0944 | BMERY_1141 | BMERY_0944 | BMERY_1141 | Cupin. | N-acetyl transferase. | 0.573 |
BMERY_0944 | BMERY_1366 | BMERY_0944 | BMERY_1366 | Cupin. | Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.528 |
BMERY_0944 | BMERY_1589 | BMERY_0944 | BMERY_1589 | Cupin. | 4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.528 |
BMERY_1140 | BMERY_1141 | BMERY_1140 | BMERY_1141 | Hypothetical protein. | N-acetyl transferase. | 0.714 |
BMERY_1140 | mfd | BMERY_1140 | BMERY_1143 | Hypothetical protein. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.581 |
BMERY_1140 | pth | BMERY_1140 | BMERY_1142 | Hypothetical protein. | aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.600 |
BMERY_1141 | BMERY_0944 | BMERY_1141 | BMERY_0944 | N-acetyl transferase. | Cupin. | 0.573 |
BMERY_1141 | BMERY_1140 | BMERY_1141 | BMERY_1140 | N-acetyl transferase. | Hypothetical protein. | 0.714 |
BMERY_1141 | BMERY_1366 | BMERY_1141 | BMERY_1366 | N-acetyl transferase. | Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.567 |
BMERY_1141 | BMERY_1589 | BMERY_1141 | BMERY_1589 | N-acetyl transferase. | 4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.622 |
BMERY_1141 | cysS | BMERY_1141 | BMERY_1767 | N-acetyl transferase. | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.537 |
BMERY_1141 | hisF | BMERY_1141 | BMERY_0732 | N-acetyl transferase. | Imidazole glycerol phosphate synthase subunit HisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. | 0.575 |
BMERY_1141 | hisH | BMERY_1141 | BMERY_1039 | N-acetyl transferase. | Imidazole glycerol phosphate synthase subunit HisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. | 0.576 |
BMERY_1141 | hisI | BMERY_1141 | BMERY_0731 | N-acetyl transferase. | phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP. | 0.544 |
BMERY_1141 | mfd | BMERY_1141 | BMERY_1143 | N-acetyl transferase. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.672 |
BMERY_1141 | pth | BMERY_1141 | BMERY_1142 | N-acetyl transferase. | aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.523 |
BMERY_1366 | BMERY_0944 | BMERY_1366 | BMERY_0944 | Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Cupin. | 0.528 |
BMERY_1366 | BMERY_1141 | BMERY_1366 | BMERY_1141 | Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | N-acetyl transferase. | 0.567 |
BMERY_1589 | BMERY_0944 | BMERY_1589 | BMERY_0944 | 4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Cupin. | 0.528 |
BMERY_1589 | BMERY_1141 | BMERY_1589 | BMERY_1141 | 4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | N-acetyl transferase. | 0.622 |
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