STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMERY_1306ACT domain protein; Belongs to the UPF0237 family. (90 aa)    
Predicted Functional Partners:
BMERY_1305
Hypothetical protein.
 
     0.941
BMERY_1896
Cystathionine beta-synthase.
     
 0.717
trpC
Indole-3-glycerol phosphate synthase / tryptophan synthase, beta subunit multi-domain protein; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine; Belongs to the TrpC family.
    
  0.669
BMERY_1347
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
     
 0.602
BMERY_1725
Acetyltransferase.
     
 0.551
BMERY_1489
Homoserine dehydrogenase.
    
  0.435
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
       0.428
BMERY_0998
Phosphoserine phosphatase.
     
 0.422
BMERY_1313
Lincomycin resistance protein LmrB.
       0.420
BMERY_1315
DeoR-family transcriptional regulator.
       0.420
Your Current Organism:
Bifidobacterium merycicum
NCBI taxonomy Id: 78345
Other names: AS 1.2273, ATCC 49391, B. merycicum, CCUG 34976, DSM 6492, JCM 8219, LMG 11341, LMG:11341, strain Ru915B
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