BMERY_1663 protein (Bifidobacterium merycicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

BMERY_1663

Amino acid ABC transporter ATP-binding protein. (256 aa)

Predicted Functional Partners:

BMERY_0157

0.959

BMERY_0524

0.948

BMERY_0526

0.946

BMERY_1904

0.939

BMERY_1905

0.939

BMERY_1675

0.936

BMERY_1674

0.922

BMERY_0279

0.899

BMERY_0522

0.899

BMERY_1249

0.898

Your Current Organism:

Bifidobacterium merycicum

NCBI taxonomy Id: 78345
Other names: AS 1.2273, ATCC 49391, B. merycicum, CCUG 34976, DSM 6492, JCM 8219, LMG 11341, LMG:11341, strain Ru915B

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BMERY_0157	BMERY_0524	ABC superfamily ATP binding cassette transporter, permease protein.	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	0.536
BMERY_0157	BMERY_0526	ABC superfamily ATP binding cassette transporter, permease protein.	L-cystine transport system permease tcyM.	0.673
BMERY_0157	BMERY_1663	ABC superfamily ATP binding cassette transporter, permease protein.	Amino acid ABC transporter ATP-binding protein.	0.959
BMERY_0157	BMERY_1674	ABC superfamily ATP binding cassette transporter, permease protein.	ABC transporter, permease protein.	0.813
BMERY_0157	BMERY_1675	ABC superfamily ATP binding cassette transporter, permease protein.	ABC transporter permease.	0.774
BMERY_0157	BMERY_1904	ABC superfamily ATP binding cassette transporter, permease protein.	Glutamate ABC transporter permease.	0.791
BMERY_0157	BMERY_1905	ABC superfamily ATP binding cassette transporter, permease protein.	Glutamate ABC transporter permease.	0.729
BMERY_0279	BMERY_1663	ABC-type multidrug transport system, ATPase.	Amino acid ABC transporter ATP-binding protein.	0.899
BMERY_0522	BMERY_1249	ABC transporter permease.	Multidrug resistance ABC superfamily ATP binding cassette transporter, ABC/membrane protein.	0.671
BMERY_0522	BMERY_1663	ABC transporter permease.	Amino acid ABC transporter ATP-binding protein.	0.899
BMERY_0524	BMERY_0157	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	ABC superfamily ATP binding cassette transporter, permease protein.	0.536
BMERY_0524	BMERY_0526	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	L-cystine transport system permease tcyM.	0.799
BMERY_0524	BMERY_1663	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	Amino acid ABC transporter ATP-binding protein.	0.948
BMERY_0524	BMERY_1674	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	ABC transporter, permease protein.	0.863
BMERY_0524	BMERY_1675	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	ABC transporter permease.	0.773
BMERY_0524	BMERY_1904	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	Glutamate ABC transporter permease.	0.798
BMERY_0524	BMERY_1905	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	Glutamate ABC transporter permease.	0.744
BMERY_0526	BMERY_0157	L-cystine transport system permease tcyM.	ABC superfamily ATP binding cassette transporter, permease protein.	0.673
BMERY_0526	BMERY_0524	L-cystine transport system permease tcyM.	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	0.799
BMERY_0526	BMERY_1663	L-cystine transport system permease tcyM.	Amino acid ABC transporter ATP-binding protein.	0.946